PRIMATES, PARASITES, AND TROPICAL CONSERVATION

  • Home
  • Resources
    • Conservation Biology
    • Genetics
    • Animal Behavior
    • Evolutionary Biology
    • Parasitology
    • Assisted Colonization
  • Night Monkeys (Aotus)
  • Tropical Conservation Fund
  • Home
  • Resources
    • Conservation Biology
    • Genetics
    • Animal Behavior
    • Evolutionary Biology
    • Parasitology
    • Assisted Colonization
  • Night Monkeys (Aotus)
  • Tropical Conservation Fund
Programs
  • RStudio: statistical computing and graphics
  • Galaxy: open source, web-based platform for data intensive biomedical research
  • QIIME: Quantitative Insights Into Microbial Ecology​ ​
  • Bioconductor
  • ​MG-RAST
Datasets
  • Personal Genome Project (Microbiome)
  • ​Human Microbiome Project (NIH)
  • NCBI Pathogen Detection. Bacterial pathogen genomic sequences originating in food, environmental sources, and patients
Tutorials
RStudio
  • Plotting in R for Biologists -- Lesson 1: From data to plot with a few magic words
  • ​Plotting in R for Biologists -- Lesson 2: Importing data from excel or text files
Galaxy
  • Galaxy Project ​
  • Galaxy: Metagenomic Example​ ​
Resources
  • R for Bioinformatics: Wellcome Trust Sanger Institute
  • Plotting in R for Biologists - Datasets, scripts, and video files

Metagenomic Datasets

  • JGI: Integrated Microbial Genomes and Microbial Samples 
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