Programs
- RStudio: statistical computing and graphics
- Galaxy: open source, web-based platform for data intensive biomedical research
- QIIME: Quantitative Insights Into Microbial Ecology
- Bioconductor
- MG-RAST
Datasets
- Personal Genome Project (Microbiome)
- Human Microbiome Project (NIH)
- NCBI Pathogen Detection. Bacterial pathogen genomic sequences originating in food, environmental sources, and patients
Tutorials
RStudio Galaxy
RStudio Galaxy
Resources
- R for Bioinformatics: Wellcome Trust Sanger Institute
- Plotting in R for Biologists - Datasets, scripts, and video files